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Welcome to Liragen Insights

Interactive NGS Reporting Platform — https://insights.liragen.com

Liragen Insights lets you explore your RNA-Seq differential expression results through interactive, publication-quality visualizations — right in your browser. No software installation needed.

Quick Start

Reports by Category

Every project generates the full report suite below. Each report is an interactive tab in the app — click a name to open its guide.

Overview & Summary

Report What it shows
Project Summary Project metadata, samples, contrasts, and downloadable data files
Analysis Overview RNA-Seq pipeline summary statistics for the whole project

Quality Control

Report What it shows
PCA Sample clustering and variance analysis
Box & Violin Normalised count distribution per sample
Heatmap by Sample Sample-to-sample correlation matrix

Differential Expression

Report What it shows
Volcano Differential expression significance vs fold change
MA Fold change vs mean expression
Bar Filtered up vs down gene counts
Gene Card Per-gene detail view
Gene Trend Expression profile across conditions
Contrast Scatter Compare fold change between two contrasts

Expression Patterns

Report What it shows
Heatmap by Gene Z-score expression patterns across samples
Clustering Dose-response / time-series expression patterns
Circos Circular differential expression visualization

Functional Enrichment

Report What it shows
GO Gene Ontology enrichment (BP, CC, MF)
KEGG KEGG pathway enrichment analysis
KEGG Pathway Map Interactive pathway network with expression overlay
Enrichment Compare Cross-contrast GO/KEGG enrichment comparison heatmap

Networks

Report What it shows
PPI Protein-protein interaction network (STRING DB)
Co-expression Gene correlation network from normalised counts
Hub Network Hub genes and their ego-networks

Multi-Contrast Overlap

Report What it shows
Venn DEG overlap across 2–3 contrasts
Upset Multi-contrast DEG intersections

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